Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trkTrk system potassium uptake protein TrkH, putative; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (484 aa)    
Predicted Functional Partners:
trkA
K+ transport systems, NAD-binding component; Identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518.
 
 
 0.973
RC1_0384
Potassium channel protein, putative; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672.
  
 
 0.871
kefB
Glutathione-regulated potassium-efflux system protein KefB; Gene symbol synonym Alternate names: K(+); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.483
RC1_2184
Conserved hypothetical protein; Identified by match to protein family HMM PF00117 match to protein family HMM PF07722.
       0.472
mrpA
Na(+)/H(+) antiporter subunit A; [Synonyms] Multiple resistance and pH homeostasis protein A Mrp complex subunit A identified by match to protein family HMM PF04442.
     
 0.447
RC1_3248
Identified by match to protein family HMM PF00027 match to protein family HMM PF00571 match to protein family HMM PF03445.
 
  
 0.429
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.427
dcp
Peptidyl-dipeptidase dcp; PF01432 With a good score above the trusted cutoff and characterized homologs; SP:P24171: Peptidyl-dipeptidase dcp (EC 3.4.15.5).
       0.424
mgtE
Magnesium transporter, putative; Acts as a magnesium transporter.
 
   
 0.416
RC1_2235
Identified by match to protein family HMM PF00496.
 
   
 0.410
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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