Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2189PepSY-associated TM helix, putative. (225 aa)    
Predicted Functional Partners:
RC1_2190
Conserved hypothetical protein; Identified by match to protein family HMM PF02566.
   
 0.992
RC1_2191
Conserved hypothetical protein; Identified by match to protein family HMM PF00199.
 
   
 0.931
apbE
Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.869
RC1_0330
Conserved hypothetical protein; Identified by match to protein family HMM PF00015 match to protein family HMM PF00989 match to protein family HMM TIGR00229.
 
  
 0.590
RC1_3218
PepSY-associated TM helix, putative; Also called iron-regulated membrane protein; identified by match to protein family HMM PF00005 match to protein family HMM TIGR02673.
 
  
 0.587
RC1_0467
NAD-binding flavodoxin, putative; Identified by match to protein family HMM TIGR01494.
 
    0.504
RC1_2392
TonB-dependent receptor, putative; Identified by match to protein family HMM PF02277.
 
  
 0.476
RC1_4124
Sigma factor regulatory protein, FecR; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF05227.
  
     0.436
sucC
succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
       0.418
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
       0.418
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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