apbE protein (Rhodospirillum centenum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

apbE

Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (344 aa)

Predicted Functional Partners:

RC1_2190

0.945

RC1_2191

0.945

RC1_2189

0.869

nosX

0.755

nosR

0.646

manC

0.401

Your Current Organism:

Rhodospirillum centenum

NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RC1_2189	RC1_2190	RC1_2189	RC1_2190	PepSY-associated TM helix, putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	0.992
RC1_2189	RC1_2191	RC1_2189	RC1_2191	PepSY-associated TM helix, putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	0.931
RC1_2189	apbE	RC1_2189	RC1_2192	PepSY-associated TM helix, putative.	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.869
RC1_2190	RC1_2189	RC1_2190	RC1_2189	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	PepSY-associated TM helix, putative.	0.992
RC1_2190	RC1_2191	RC1_2190	RC1_2191	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	0.980
RC1_2190	apbE	RC1_2190	RC1_2192	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.945
RC1_2190	nosX	RC1_2190	RC1_3907	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	NosX protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.709
RC1_2191	RC1_2189	RC1_2191	RC1_2189	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	PepSY-associated TM helix, putative.	0.931
RC1_2191	RC1_2190	RC1_2191	RC1_2190	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	0.980
RC1_2191	apbE	RC1_2191	RC1_2192	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.945
RC1_2191	nosX	RC1_2191	RC1_3907	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	NosX protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.591
apbE	RC1_2189	RC1_2192	RC1_2189	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	PepSY-associated TM helix, putative.	0.869
apbE	RC1_2190	RC1_2192	RC1_2190	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	Conserved hypothetical protein; Identified by match to protein family HMM PF02566.	0.945
apbE	RC1_2191	RC1_2192	RC1_2191	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	Conserved hypothetical protein; Identified by match to protein family HMM PF00199.	0.945
apbE	manC	RC1_2192	RC1_0172	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	Mannose-1-phosphate guanylyltransferase; Also called mannose-6-phosphate isomerase.Gene symbol synonyms rfbM rfbM1 identified by match to protein family HMM PF01656; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.401
apbE	nosR	RC1_2192	RC1_3913	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	Nitrous oxide reductase regulatory protein NosR.	0.646
apbE	nosX	RC1_2192	RC1_3907	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	NosX protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.755
manC	apbE	RC1_0172	RC1_2192	Mannose-1-phosphate guanylyltransferase; Also called mannose-6-phosphate isomerase.Gene symbol synonyms rfbM rfbM1 identified by match to protein family HMM PF01656; Belongs to the mannose-6-phosphate isomerase type 2 family.	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.401
manC	nosX	RC1_0172	RC1_3907	Mannose-1-phosphate guanylyltransferase; Also called mannose-6-phosphate isomerase.Gene symbol synonyms rfbM rfbM1 identified by match to protein family HMM PF01656; Belongs to the mannose-6-phosphate isomerase type 2 family.	NosX protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.401
nosR	apbE	RC1_3913	RC1_2192	Nitrous oxide reductase regulatory protein NosR.	Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.	0.646

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About