Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2201Conserved hypothetical protein; Identified by match to protein family HMM PF01507 match to protein family HMM TIGR02039. (501 aa)    
Predicted Functional Partners:
wcaJ
Colanic biosynthesis UDP-glucose lipid carrier transferase, putative.
  
  
 0.565
RC1_2200
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF01507 match to protein family HMM TIGR00434.
       0.510
RC1_2199
Conserved hypothetical protein; Identified by match to protein family HMM PF06073.
       0.444
RC1_0824
Glycosyl transferase family protein.
  
  
 0.402
RC1_2202
Identified by match to protein family HMM PF00009 match to protein family HMM PF01583 match to protein family HMM PF03144 match to protein family HMM TIGR00455 match to protein family HMM TIGR02034.
       0.401
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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