STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2258DNA-binding protein, putative; Identified by match to protein family HMM PF06945. (110 aa)    
Predicted Functional Partners:
RC1_1909
Conserved hypothetical protein; Identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518.
 
 
 
 0.950
RC1_2754
Conserved hypothetical protein.
  
     0.516
RC1_2254
Conserved hypothetical protein.
 
     0.469
RC1_2489
Conserved hypothetical protein; Identified by match to protein family HMM PF01027.
 
   
 0.419
dps
Dps family protein; Also called ferritin-like protein and DNA-binding stress protein; identified by match to protein family HMM PF06242; Belongs to the Dps family.
   
    0.412
dps-2
Dps family protein; Also called ferritin-like protein and DNA-binding stress protein; identified by match to protein family HMM PF00107 match to protein family HMM TIGR02824; Belongs to the Dps family.
   
    0.412
RC1_1709
Conserved hypothetical protein; Identified by match to protein family HMM PF00004 match to protein family HMM PF02861 match to protein family HMM PF07724 match to protein family HMM PF07728 match to protein family HMM TIGR02639.
 
     0.411
RC1_3552
Protein prkA, putative; Identified by match to protein family HMM PF05013.
   
    0.400
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.