STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2300Conserved hypothetical protein. (148 aa)    
Predicted Functional Partners:
RC1_2301
Nucleotidyltransferase, putative; Identified by match to protein family HMM PF00468 match to protein family HMM TIGR01030.
 
 
   0.959
RC1_2302
Sulfolipid (UDP-sulfoquinovose) biosynthesis protein, putative; Identified by match to protein family HMM PF00825 match to protein family HMM TIGR00188.
       0.634
RC1_2299
RmuC domain protein; Identified by match to protein family HMM PF00070 match to protein family HMM PF01134 match to protein family HMM PF01266 match to protein family HMM PF02852 match to protein family HMM PF07992.
       0.576
RC1_2669
Nucleotidyltransferase, putative; Identified by match to protein family HMM TIGR01983.
 
   
 0.440
RC1_2668
Conserved hypothetical protein; Identified by match to protein family HMM PF00696 match to protein family HMM PF01842 match to protein family HMM TIGR00656 match to protein family HMM TIGR00657.
  
     0.421
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.