STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2309Aminopeptidase family M28, putative; PF04389 With a good score above the trusted cutoff and uncharacterized homologs. (532 aa)    
Predicted Functional Partners:
RC1_0403
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00027.
  
     0.695
btuB-2
Vitamin B12 transporter btuB precursor, putative; Gene symbol synonyms.
  
     0.691
RC1_3723
TonB-dependent receptor, putative.
  
     0.680
RC1_0580
TonB-dependent receptor, putative; Identified by match to protein family HMM PF01063.
  
     0.677
copA
TonB-dependent outer membrane receptor, putative; Copper-transporting P-type ATPase;identified by match to protein family HMM PF03927.
  
     0.659
RC1_0402
TonB dependent receptor, putative; Identified by match to protein family HMM PF00440.
  
     0.655
RC1_0046
Conserved hypothetical protein.
    
  0.653
RC1_2308
Conserved hypothetical protein; Identified by match to protein family HMM PF00696 match to protein family HMM TIGR00761.
       0.650
RC1_2323
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
  
 0.637
RC1_1181
Dipeptidyl peptidase IV; PF00930Characterized gene (PMID: 9010758).
  
    0.610
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.