STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaZ[synonyms] intracellular polyhydroxyalkanoate depolymerase. (416 aa)    
Predicted Functional Partners:
phbC
[synonyms] (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synt Hase) (Poly(3-hydroxyalkanoate) polymerase).
 
  
 0.988
phaC
Polyhydroxyalkanoic acid synthase, putative; PHA synt Hase,PHB polymerase, poly-beta-hydroxybutyrate polymerase; identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028.
 
  
 0.938
phbB
acetoacetyl-CoA reductase; Identified by match to protein family HMM PF04333.
  
   
 0.815
phaR
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.712
RC1_0877
Transglutaminase-like domain protein; Identified by match to protein family HMM PF00270 match to protein family HMM PF00271.
     
 0.711
RC1_0874
Transglutaminase-like domain protein; Identified by match to protein family HMM PF01979 match to protein family HMM PF07969.
     
 0.692
flbD
Transcriptional regulatory protein FlbD (LafK); Contains PF00158.
      
 0.691
glnE
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
      
 0.691
aglA
Alpha-glucosidase, putative; Identified by match to protein family HMM PF00383.
      
 0.691
glnD
protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism.
      
 0.691
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: low (38%) [HD]