Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2437Hypothetical protein; Identified by Glimmer2 putative. (255 aa)    
Predicted Functional Partners:
nhaP
Na+/H+ antiporter NhaP, putative.
    
 0.899
RC1_2443
Identified by match to protein family HMM PF01479.
    
 0.899
RC1_1414
Probable ATPase; [contains]tetratricopeptide repeat identified by Glimmer2 putative.
    
 0.890
fkpA
Fkbp-type peptidyl-prolyl cis-trans isomerase FkpA; PF00254Characterization: SP:O08437 identified by match to protein family HMM PF01979 match to protein family HMM PF07969.
   
 0.882
RC1_0562
Histone deacetylase; Identified by match to protein family HMM PF01551.
    
 0.881
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.861
cbbX
Rubisco accessary protein AAA type ATPase CbbX; Identified by match to protein family HMM PF07883.
    
 0.860
RC1_0046
Conserved hypothetical protein.
   
 0.839
RC1_1310
Conserved hypothetical protein.
    
 0.831
RC1_2224
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
    
 0.831
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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