STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
troBZinc transport system ATP-binding protein TroB. (259 aa)    
Predicted Functional Partners:
troC
Zinc transport system membrane protein TroC; Identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730.
 
 0.999
troD
Zinc transport system membrane protein TroD; Identified by match to protein family HMM PF00005 match to protein family HMM PF02687.
 
 0.999
troA
Periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.998
znuB
High-affinity zinc uptake system membrane protein ZnuB; Part of the znu operon; identified by match to protein family HMM PF00028 match to protein family HMM PF00353.
 
 
 0.976
znuA
High-affinity zinc uptake system protein ZnuA; Part of the znu operon; identified by match to protein family HMM PF06347.
 
  
 0.931
RC1_2463
Hypothetical protein; Identified by Glimmer2 putative.
       0.654
fur
Ferric uptake regulation protein; Belongs to the Fur family.
 
  
 0.603
zur
Zinc uptake regulation protein; Alternate name identified by match to protein family HMM PF05433; Belongs to the Fur family.
 
  
 0.556
fur-2
Transcriptional regulator, Fur family protein; Belongs to the Fur family.
  
  
 0.481
RC1_2458
Conserved hypothetical protein.
       0.415
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.