STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furFerric uptake regulation protein; Belongs to the Fur family. (164 aa)    
Predicted Functional Partners:
ahpC
Alkyl hydroperoxide reductase C; Identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681.
  
  
 0.881
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.817
trx
Thioredoxin; Identified by match to protein family HMM PF02195 match to protein family HMM TIGR00180; Belongs to the thioredoxin family.
  
 
 0.806
RC1_2559
Hypothetical protein; Identified by Glimmer2 putative.
       0.778
RC1_1318
CoA binding domain protein; Identified by match to protein family HMM PF03320 match to protein family HMM TIGR00330.
  
    0.692
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.632
rpoC
DNA-directed RNA polymerase, beta' subunit, putative; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.631
rpoZ
DNA-directed RNA polymerase, omega subunit, putative; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.631
troB
Zinc transport system ATP-binding protein TroB.
 
  
 0.603
troD
Zinc transport system membrane protein TroD; Identified by match to protein family HMM PF00005 match to protein family HMM PF02687.
 
  
 0.526
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.