STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2560GGDEF domain protein; Identified by match to protein family HMM PF00534. (315 aa)    
Predicted Functional Partners:
RC1_1864
Diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF05170.
  
 0.851
RC1_4055
Response regulator receiver domain protein.
  
 0.839
RC1_1180
[contains] EAL domain, region 9-239; diguanylate cyclase (GGDEF) domain, region 401-562; identified by match to protein family HMM PF00144 match to protein family HMM PF00768 match to protein family HMM PF07943.
 
  
 0.816
rpFG
Response regulator R PFG; Contains PF01966 identified by match to protein family HMM PF04329 match to protein family HMM PF04330 match to protein family HMM PF04331.
 
 0.809
RC1_3168
Diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF02592 match to protein family HMM TIGR00697.
 
  
 0.786
RC1_1492
Diguanylate cyclase, putative; Contains EAL domain and GGDEF domain; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
 
0.667
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
  
 0.648
RC1_3033
Sensor protein torS, putative.
  
  
 0.648
flgL
Flagellar hook-associated protein 3 FlgL, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
 
 0.645
RC1_1483
Sensory box protein, putative; Contains TIGR00229.
 
 0.644
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.