STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2613NADH dehydrogenase. (207 aa)    
Predicted Functional Partners:
RC1_3786
Conserved hypothetical protein; Identified by match to protein family HMM PF00534.
  
  
 0.765
RC1_0303
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00122 match to protein family HMM PF00702 match to protein family HMM TIGR01494 match to protein family HMM TIGR01524.
  
  
 0.610
RC1_3727
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02579 match to protein family HMM PF04055 match to protein family HMM TIGR01290.
  
  
 0.610
RC1_1696
Membrane protease, putative.
  
  
 0.527
RC1_2614
Conserved hypothetical protein; [contains] Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain identified by match to protein family HMM PF01842 match to protein family HMM PF01966 match to protein family HMM TIGR01693.
       0.527
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
     
 0.472
yhhJ
Inner membrane transport permease YhhJ, putative; Identified by match to protein family HMM PF06057.
  
    0.451
RC1_2058
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00990 match to protein family HMM TIGR00254.
  
    0.451
RC1_2539
ABC transporter permease protein, putative; Identified by match to protein family HMM PF06667 match to protein family HMM TIGR02976.
  
    0.451
RC1_2850
Abc2a; Identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229.
  
    0.451
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.