STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2618Conserved hypothetical protein. (292 aa)    
Predicted Functional Partners:
RC1_2619
Conserved domain protein.
 
     0.957
RC1_2617
Identified by match to protein family HMM PF00118 match to protein family HMM TIGR02348.
 
     0.952
uspA-2
Identified by match to protein family HMM PF07332.
 
     0.786
RC1_2429
Conserved hypothetical protein; Identified by match to protein family HMM PF06803.
  
     0.612
RC1_3314
Conserved hypothetical protein; Identified by match to protein family HMM PF00501.
  
     0.557
pcp
Pyrrolidone-carboxylate peptidase Pcp; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
       0.544
RC1_2768
Conserved hypothetical protein; Identified by match to protein family HMM PF00483 match to protein family HMM TIGR02091.
  
     0.541
RC1_1900
Conserved hypothetical protein.
  
     0.528
RC1_1649
Conserved hypothetical protein; Identified by match to protein family HMM PF01565 match to protein family HMM PF02913; Belongs to the UPF0262 family.
  
     0.518
RC1_2256
Conserved hypothetical protein; Identified by match to protein family HMM PF00561 match to protein family HMM TIGR01249.
  
     0.516
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.