STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mviNIntegral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (513 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; [includes] Riboflavin kinase, FMN adenylyltransferase identified by match to protein family HMM PF06798; Belongs to the ribF family.
    
 0.682
trpS
tryptophanyl-tRNA synthetase TrpS; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.650
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
   
 0.635
mrdA
Penicillin-binding protein 2; Gene symbol synonym pbpA.Part of the rodA operon.
 
   
 0.621
flgF
Flagellar basal-body rod protein FlgF; Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00691; Belongs to the flagella basal body rod proteins family.
    
 
 0.619
flgF-2
Flagellar basal-body rod protein FlgF; Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00204 match to protein family HMM PF00986 match to protein family HMM PF01751 match to protein family HMM PF02518 match to protein family HMM TIGR01055; Belongs to the flagella basal body rod proteins family.
    
 
 0.619
rodA
Rod shape-determining protein RodA (FtsW, Bacterial cell division membrane protein); Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.610
rpoD
DNA-directed RNA polymerase, sigma subunit RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
   
 0.562
manC
Mannose-1-phosphate guanylyltransferase; Also called mannose-6-phosphate isomerase.Gene symbol synonyms rfbM rfbM1 identified by match to protein family HMM PF01656; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.538
yidC
Conserved hypothetical protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
   
 0.526
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.