STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2631M23 peptidase domain protein. (480 aa)    
Predicted Functional Partners:
mrcA
Penicillin-binding protein 1A (PBP-1a) (PBP1a) MrcA, putative; TIGR02074 PF00905: Penicillin binding protein transpeptidase domain; Penicillin-insensitive transglycosylase (EC 2.4.2.-)(Peptidoglycan TGase) Penicillin-sensitive transpeptidase(EC 3.4.-.-)(DD-transpeptidase); identified by match to protein family HMM PF00070 match to protein family HMM PF02852 match to protein family HMM PF07992 match to protein family HMM TIGR01424.
 
   
 0.629
lepB
Signal peptidase I, LepB, putative; Identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776; Belongs to the peptidase S26 family.
 
  
 0.595
RC1_2632
Identified by match to protein family HMM PF00580.
       0.587
RC1_2700
Penicillin-binding protein, 1A family; TIGR02074 With a good score above the trusted cutoff and uncharacterized homologs; PF00905: Penicillin binding protein transpeptidase domain.
  
   
 0.561
RC1_0556
Membrane-bound metallopeptidase, putative; PF01551 identified by match to protein family HMM PF00106.
 
   
 0.537
znuA
High-affinity zinc uptake system protein ZnuA; Part of the znu operon; identified by match to protein family HMM PF06347.
  
  
 0.512
RC1_1917
TPR domain protein; Identified by match to protein family HMM PF03807 match to protein family HMM TIGR00112.
     
 0.439
RC1_1027
Beta-glucosidase-like protein.
 
  
 0.414
RC1_0824
Glycosyl transferase family protein.
  
  
 0.411
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
 
 
 0.408
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.