STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2648Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF01470. (612 aa)    
Predicted Functional Partners:
RC1_3459
Response regulator receiver domain protein; Identified by match to protein family HMM PF06172.
 
   
 0.824
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
 
   
 0.801
RC1_1433
Response regulator receiver domain protein; Identified by match to protein family HMM PF00361.
 
   
 0.790
RC1_1368
Response regulator receiver domain protein; Identified by match to protein family HMM PF00149.
     0.774
RC1_3915
Sensory box sensor histidine kinase, putative.
  
     0.594
RC1_0908
Sensory box sensor histidine kinase, putative; Identified by match to protein family HMM PF00154 match to protein family HMM TIGR02012.
 
     0.591
RC1_2400
Sensory box sensor histidine kinase, putative; Identified by match to protein family HMM PF07804 match to protein family HMM PF07805.
 
     0.589
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
       0.584
RC1_2649
Zinc-type alcohol dehydrogenase, putative.
       0.543
RC1_2399
Response regulator receiver domain protein.
 
     0.465
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.