STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjcHInner membrane protein YjcH, putative; Identified by match to protein family HMM PF01694. (101 aa)    
Predicted Functional Partners:
actP
Cation/acetate symporter ActP; Identified by match to protein family HMM PF01551; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.993
RC1_2651
Conserved hypothetical protein; Identified by match to protein family HMM PF00579 match to protein family HMM TIGR00233.
 
  
 0.932
RC1_3220
Sodium/solute symporter, putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.874
aceB
Malate synthase A; Identified by match to protein family HMM PF00639; Belongs to the malate synthase family.
   
    0.818
RC1_3221
Nucleotidyltransferase; Identified by match to protein family HMM PF00310 match to protein family HMM PF01493 match to protein family HMM PF01645 match to protein family HMM PF04898.
  
  
 0.748
prpE
propionate--CoA ligase; [Synonyms] Propionyl-CoA synthetase identified by match to protein family HMM PF00691.
  
  
 0.707
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.707
RC1_3030
acetyl-CoA synthetase, putative; Identified by match to protein family HMM PF03562 match to protein family HMM PF06725.
  
  
 0.707
aceA
Synonymincludes isocitrate lyase(EC 4.1.3.1) and malate synt Hase(EC 2.3.3.9) identified by match to protein family HMM PF00583.
   
    0.428
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.