STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2684Conserved hypothetical protein. (216 aa)    
Predicted Functional Partners:
RC1_2904
Conserved hypothetical protein; Identified by match to protein family HMM PF00037 match to protein family HMM TIGR00273.
  
     0.774
RC1_1944
Conserved hypothetical protein; Identified by match to protein family HMM PF00271 match to protein family HMM TIGR02621.
  
     0.606
RC1_1310
Conserved hypothetical protein.
  
     0.550
RC1_2685
Conserved hypothetical protein; Identified by match to protein family HMM PF00293.
       0.510
RC1_1709
Conserved hypothetical protein; Identified by match to protein family HMM PF00004 match to protein family HMM PF02861 match to protein family HMM PF07724 match to protein family HMM PF07728 match to protein family HMM TIGR02639.
  
     0.499
tmk
Thymidylate kinase, putative; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.488
RC1_3492
Conserved hypothetical protein.
  
     0.452
traN
Protein TraN.
  
     0.441
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.