STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2734HlyD family secretion protein. (412 aa)    
Predicted Functional Partners:
cvaB
Colicin V secretion; PF00005 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02264.
 
 
 0.983
macB-2
Macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.818
RC1_1160
Type I secretion outer membrane protein, TolC family; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.705
RC1_2440
Outer membrane efflux lipoprotein, NodT family protein; Identified by match to protein family HMM PF01209.
 
 
 0.649
RC1_3750
RND efflux system, outer membrane lipoprotein, NodT family.
  
 
 0.604
nodT
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.604
RC1_3821
Outer membrane efflux protein; Identified by match to protein family HMM PF00005 match to protein family HMM PF00664.
 
 
 0.599
RC1_0521
Hypothetical protein; Identified by Glimmer2 putative.
  
 
 0.537
yjfL
Inner membrane protein YjfL.
  
     0.511
prtD
Proteases secretion ATP-binding protein PrtD; Identified by match to protein family HMM PF00015.
 
  
 0.500
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.