STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_2768Conserved hypothetical protein; Identified by match to protein family HMM PF00483 match to protein family HMM TIGR02091. (226 aa)    
Predicted Functional Partners:
RC1_2767
Sugar kinase.
 
     0.701
RC1_2769
Conserved hypothetical protein; Identified by match to protein family HMM PF00534 match to protein family HMM TIGR02095.
       0.618
RC1_2376
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00355.
  
     0.568
RC1_2618
Conserved hypothetical protein.
  
     0.541
holB
ATPase i.
  
     0.520
RC1_1862
Conserved hypothetical protein; Identified by match to protein family HMM PF01734.
  
     0.492
RC1_3086
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF02518 match to protein family HMM PF07568.
  
     0.491
RC1_2485
Conserved hypothetical protein; Identified by match to protein family HMM PF00950.
  
     0.490
RC1_2937
Conserved hypothetical protein.
  
     0.490
RC1_1900
Conserved hypothetical protein.
  
     0.489
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.