STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3059Conserved hypothetical protein. (431 aa)    
Predicted Functional Partners:
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.705
RC1_3880
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.672
RC1_3306
Conserved hypothetical protein; Identified by match to protein family HMM PF02798.
  
     0.658
RC1_2580
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF01381.
  
     0.645
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.627
RC1_3457
Conserved hypothetical protein.
  
     0.612
RC1_2549
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.585
RC1_0398
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF01323.
  
     0.583
RC1_2502
Identified by match to protein family HMM PF04519.
  
     0.567
divJ-2
Histidine protein kinase DivJ; Contains PF02518 identified by match to protein family HMM PF01627.
       0.556
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.