STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3106Conserved hypothetical protein; Identified by match to protein family HMM PF01722. (112 aa)    
Predicted Functional Partners:
RC1_3107
Conserved hypothetical protein.
 
     0.948
metF
5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.935
RC1_3109
Hypothetical protein; Identified by Glimmer2 putative.
 
     0.923
RC1_3105
Cell wall hydrolyse, putative; Identified by match to protein family HMM PF00892.
 
     0.916
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.894
ahcY
Adenosylhomocysteinase, putative; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
  
  
 0.883
RC1_3113
Conserved hypothetical protein.
 
     0.852
RC1_3114
Conserved hypothetical protein; Identified by match to protein family HMM PF00657.
 
     0.851
RC1_3115
Conserved hypothetical protein.
 
     0.833
RC1_3116
Conserved hypothetical protein; Identified by match to protein family HMM PF00248.
 
     0.825
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.