Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC1_3147Peptidase M48 family, putative; PF01435. (412 aa)    
Predicted Functional Partners:
RC1_3149
Membrane protein, putative; Identified by match to protein family HMM PF00561.
 
     0.929
RC1_1917
TPR domain protein; Identified by match to protein family HMM PF03807 match to protein family HMM TIGR00112.
   
 
 0.746
RC1_0824
Glycosyl transferase family protein.
   
 
 0.709
RC1_0556
Membrane-bound metallopeptidase, putative; PF01551 identified by match to protein family HMM PF00106.
   
   0.610
RC1_3151
Identified by match to protein family HMM PF00528 match to protein family HMM TIGR01726.
     
 0.529
RC1_3150
Hypothetical protein; Identified by Glimmer2 putative.
       0.492
polA
DNA polymerase I, putative; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.452
ctpA
Carboxy-terminal processing protease CtpA; Conserved hypothetical protein, pseudogene;identified by match to protein family HMM PF00107; Belongs to the peptidase S41A family.
   
   0.415
RC1_1530
Carboxyl-terminal protease; TIGR00225Microbiology; 1997 Apr143 (Pt 4):1221-33; (For characterization); identified by match to protein family HMM PF00324; Belongs to the peptidase S41A family.
   
   0.415
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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