STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3187Transcriptional regulator, PadR family protein; Identified by match to protein family HMM PF00005. (334 aa)    
Predicted Functional Partners:
RC1_1377
Transcriptional regulator, AsnC family protein; Identified by match to protein family HMM PF00036 match to protein family HMM PF00691.
   
  
 0.698
expG
Exopolysaccharide II synthesis transcriptional activator ExpG; Gene symbol synonym Contains PF01047: transcriptional regulator, MarR family.
      
 0.695
expG-2
Exopolysaccharide II synthesis transcriptional activator ExpG; Gene symbol synonym identified by match to protein family HMM PF03981.
      
 0.694
mucR-2
Transcriptional regulatory protein MucR; Matched to PF05443 identified by match to protein family HMM PF00072 match to protein family HMM PF00196.
      
 0.691
RC1_3184
Conserved hypothetical protein.
       0.678
RC1_3186
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00950.
       0.678
cobB
NAD-dependent deacetylase; [Synonyms] Regulatory protein SIR2 homolog identified by match to protein family HMM PF02325; Belongs to the sirtuin family. Class III subfamily.
  
    0.414
RC1_2057
ABC transporter, ATP-binding protein, putative.
 
    0.401
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.