STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiARibosomal subunit interface protein, putative; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (211 aa)    
Predicted Functional Partners:
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 
 0.964
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.961
rpmA
PF01016 TIGR00062: ribosomal protein L27; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01810.
   
 
 0.957
rpmH
Ribosomal protein L34; Identified by match to protein family HMM PF00015; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.956
ptsN
PTS IIA-like nitrogen-regulatory protein PtsN, putative; Identified by match to protein family HMM PF04055 match to protein family HMM PF06969 match to protein family HMM TIGR00538.
  
  
 0.956
rpmC
Ribosomal protein L29; PF00831 identified by match to protein family HMM PF00297; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.955
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.955
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.955
rpsP
Ribosomal protein S16; Identified by match to protein family HMM PF00549 match to protein family HMM PF02629 match to protein family HMM TIGR01019; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.955
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
    
 
 0.954
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.