STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3206Conserved hypothetical protein; Identified by match to protein family HMM PF03767. (72 aa)    
Predicted Functional Partners:
lon
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
    
   0.775
RC1_3297
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF03109 match to protein family HMM TIGR01982.
  
     0.754
RC1_2224
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
  
     0.740
RC1_2940
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.737
RC1_4112
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.702
RC1_1828
Conserved hypothetical protein; Identified by match to protein family HMM PF05164.
  
     0.690
RC1_3081
Conserved hypothetical protein.
  
     0.687
hspA
Heat shock protein,hsp20 family HspA, putative; PF00011 With many homologs, all are Hsp20 family chaperons, but not characterized; identified by match to protein family HMM PF04055; Belongs to the small heat shock protein (HSP20) family.
 
     0.674
RC1_2351
Conserved hypothetical protein; Identified by match to protein family HMM PF01047.
  
     0.667
RC1_1847
Conserved hypothetical protein; Identified by match to protein family HMM PF01132 match to protein family HMM PF08207 match to protein family HMM TIGR00038.
  
     0.646
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.