STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3257[synonyms] 2-methylacyl-CoA racemase [similarity] Belongs to the caiB. (393 aa)    
Predicted Functional Partners:
RC1_3258
Oxidoreductase, 2-nitropropane dioxygenase family.
  
    0.645
bhbA
methylmalonyl-CoA mutase.
     
 0.487
RC1_3256
Conserved hypothetical protein; Identified by match to protein family HMM PF00081 match to protein family HMM PF02777 match to protein family HMM TIGR01409.
       0.480
citE
[Synonyms] Citrase beta chain Citrate (pro-3S)-lyase beta chain Citryl-CoA lyase subunit; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.463
RC1_1519
Membrane transport protein, putative; Identified by match to protein family HMM PF01936.
  
  
 0.459
RC1_3528
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF00036.
 
  
 0.400
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.