STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3275TPR domain protein, putative; Identified by match to protein family HMM PF02080 match to protein family HMM PF03600. (269 aa)    
Predicted Functional Partners:
ctpA
Carboxy-terminal processing protease CtpA; Conserved hypothetical protein, pseudogene;identified by match to protein family HMM PF00107; Belongs to the peptidase S41A family.
    
 
 0.772
RC1_1530
Carboxyl-terminal protease; TIGR00225Microbiology; 1997 Apr143 (Pt 4):1221-33; (For characterization); identified by match to protein family HMM PF00324; Belongs to the peptidase S41A family.
    
 
 0.772
RC1_3276
Conserved hypothetical protein; Identified by match to protein family HMM PF00571.
       0.651
RC1_2470
Conserved hypothetical protein.
  
     0.542
RC1_1750
Conserved hypothetical protein.
  
     0.519
RC1_1623
Conserved hypothetical protein; Identified by match to protein family HMM PF05960.
  
     0.492
RC1_0787
Probable DNA polymerase III; Identified by match to protein family HMM PF00291.
  
     0.489
RC1_2937
Conserved hypothetical protein.
  
     0.478
RC1_1550
Conserved hypothetical protein; Identified by match to protein family HMM PF00471 match to protein family HMM TIGR01023.
  
     0.476
RC1_2642
Conserved hypothetical protein; Identified by match to protein family HMM PF01832.
  
  
 0.474
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.