Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alkKmedium-chain-fatty-acid--CoA ligase; [synonyms] Medium-chain acyl-CoA synthetase identified by match to protein family HMM PF05016. (550 aa)    
Predicted Functional Partners:
RC1_1946
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM TIGR02570.
 
 
  0.916
RC1_1632
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00111.
 
 
  0.915
RC1_1018
acyl-CoA dehydrogenase, putative.
 
 
  0.795
RC1_3098
acyl-CoA dehydrogenase, putative.
 
 
  0.748
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.715
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.645
RC1_0747
Conserved domain protein.
  
 
 0.644
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.639
rplX
Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
    
   0.637
RC1_0534
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993.
 
 
  0.636
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.