STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
divJ-3Histidine protein kinase DivJ. (478 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA; Identified by match to protein family HMM PF01887.
 
 
0.994
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
 
 0.980
RC1_3033
Sensor protein torS, putative.
  
 
 0.980
RC1_0351
Multi-sensor hybrid histidine kinase, putative; Identified by match to protein family HMM PF01740.
 
0.979
RC1_1779
Response regulator receiver domain protein; Identified by match to protein family HMM PF04055 match to protein family HMM PF06463 match to protein family HMM TIGR02666.
 
 0.977
pdhB
Pyruvate dehydrogenase E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.964
divK
Cell division response regulator protein DivK; Identified by match to protein family HMM PF01425 match to protein family HMM TIGR00132.
 
 0.963
RC1_1532
Response regulator With diguanylate cyclase (GGDEF) domain, putative.
 
 0.958
cstS3
cstS3; Identified by match to protein family HMM TIGR03055.
 
 0.955
divJ-5
Histidine protein kinase DivJ (or putative bacteriophytochrome); Identified by match to protein family HMM PF01354 match to protein family HMM PF03102.
 
 
0.955
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.