STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3371Conserved hypothetical protein; Identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF01590 match to protein family HMM PF02518 match to protein family HMM TIGR00229. (336 aa)    
Predicted Functional Partners:
RC1_2806
Conserved hypothetical protein; Identified by match to protein family HMM PF00543.
    
   0.829
RC1_0286
Polyhydroxyalkanoic acid depolymerase; [synonyms] PHA depolymerase PHB depolymerase identified by match to protein family HMM PF02310 match to protein family HMM PF04055 match to protein family HMM TIGR02026.
   
   0.693
RC1_1372
Identified by match to protein family HMM PF00561.
  
  
 0.671
RC1_3372
Hydrolase, NUDIX family, putative; Identified by match to protein family HMM PF00903 match to protein family HMM TIGR01263.
       0.548
RC1_0025
Acetyltransferase, gnat family; Identified by match to protein family HMM PF00005 match to protein family HMM PF00664.
  
    0.527
RC1_0602
Hypothetical protein; Identified by Glimmer2 putative.
  
  
 0.487
RC1_3091
2'-5' RNA ligase, putative; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
  
 0.487
RC1_0291
TonB dependent receptor, putative.
   
  
 0.478
RC1_2392
TonB-dependent receptor, putative; Identified by match to protein family HMM PF02277.
   
  
 0.478
wsp
Surface protein (Wolbachia endosymbiont), putative.
  
   
 0.414
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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