STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3388Serralysin precursor, putative; Has some uncharacterized homologs identified as Serralysin precursor. (650 aa)    
Predicted Functional Partners:
RC1_3143
Alkaline Protease, putative.
  
  
 
0.928
RC1_4001
Alkaline protease, putative; PF00353 identified by match to protein family HMM PF01964 match to protein family HMM TIGR00190.
  
  
 
0.912
prtD
Proteases secretion ATP-binding protein PrtD; Identified by match to protein family HMM PF00015.
 
 
 0.773
RC1_0358
Identified by match to protein family HMM PF00072 match to protein family HMM PF00196.
 
  
 0.730
RC1_3307
Integrins alpha chain, putative; Identified by match to protein family HMM PF01209.
  
     0.721
expC
Glycosyl transferase family protein.
 
   
 0.580
RC1_3389
DNA repair protein RadC, putative; Identified by match to protein family HMM PF01259 match to protein family HMM TIGR00081; Belongs to the UPF0758 family.
  
    0.564
cvaB
Colicin V secretion; PF00005 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02264.
  
  
 0.547
RC1_3608
Type I secretion target ggxgxdxxx repeat (2 copies) domain protein.
 
 
0.481
purB
Adenylosuccinate lyase; Identified by match to protein family HMM PF00563 match to protein family HMM PF00990 match to protein family HMM PF01590 match to protein family HMM TIGR00254; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.476
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.