STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3415ATPase, putative; Identified by match to protein family HMM PF00697. (337 aa)    
Predicted Functional Partners:
RC1_3414
DUF58 domain-containing protein; Double-transmembrane region pseudogene;identified by match to protein family HMM PF01863.
  
 0.977
RC1_3411
Conserved hypothetical protein; Identified by match to protein family HMM PF00162.
 
     0.771
RC1_3416
Conserved hypothetical protein; Identified by match to protein family HMM PF00797.
 
     0.633
RC1_4100
Conserved hypothetical protein; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509.
  
 
   0.608
RC1_3417
Nudix family hydrolase, putative; Identified by match to protein family HMM PF00206 match to protein family HMM TIGR00928.
       0.575
cbbO
Rubisco activation protein CbbO, putative; [contains] von Willebrand factor type A domain identified by match to protein family HMM PF00016 match to protein family HMM PF02788.
  
  
 0.486
RC1_3419
Family also contains tRNA nucleotidyltransferase protein; identified by match to protein family HMM PF04002 match to protein family HMM TIGR00608; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.454
dme
NAD-dependent malic enzyme; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028.
  
    0.440
tme
NADP-dependent malic enzyme; Synonym gene name 'maeB' from E.coli identified by match to protein family HMM PF00392 match to protein family HMM PF07702 match to protein family HMM TIGR02018.
  
    0.440
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.