Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3418Hypothetical protein; Identified by Glimmer2 putative. (111 aa)    
Predicted Functional Partners:
RC1_3416
Conserved hypothetical protein; Identified by match to protein family HMM PF00797.
       0.651
RC1_3417
Nudix family hydrolase, putative; Identified by match to protein family HMM PF00206 match to protein family HMM TIGR00928.
       0.651
RC1_3419
Family also contains tRNA nucleotidyltransferase protein; identified by match to protein family HMM PF04002 match to protein family HMM TIGR00608; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.589
RC1_3415
ATPase, putative; Identified by match to protein family HMM PF00697.
       0.411
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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