STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3427Conserved domain protein. (65 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin; Iron-storage protein.
  
 
 0.946
nifB
FeMo cofactor biosynthesis protein nifB.
     
 0.790
nifW
Nitrogenase-stabilizing/protective protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
     
 0.760
RC1_0885
Tetratricopeptide TPR_2 (cell wall/envelope/membrane biosynthesis); Identified by match to protein family HMM PF04168 match to protein family HMM PF04169 match to protein family HMM PF04174.
  
   
 0.737
aglA
Alpha-glucosidase, putative; Identified by match to protein family HMM PF00383.
      
 0.716
aglA-2
Alpha-glucosidase; Identified by match to protein family HMM PF00977 match to protein family HMM TIGR00007.
      
 0.716
glnB
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00507; Belongs to the P(II) protein family.
      
 0.695
glnE
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
      
 0.695
amtB
Ammonia transporter; Alternate name.
   
  
 0.693
cbbL2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
      
 0.692
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.