STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3432Diguanylate cyclase, putative; Contains TIGRO00254 and PF00990; identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229. (383 aa)    
Predicted Functional Partners:
RC1_4055
Response regulator receiver domain protein.
 
 0.985
RC1_1483
Sensory box protein, putative; Contains TIGR00229.
 
 0.977
barA
Signal transduction histidine-protein kinase BarA; Identified by match to protein family HMM PF01887.
 
 0.949
RC1_3877
Diguanylate cyclase, putative; Contains EAL domain and GGDEF domain.
 
 0.946
RC1_3448
Diguanylate cyclase, putative.
 
 
0.933
RC1_1492
Diguanylate cyclase, putative; Contains EAL domain and GGDEF domain; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
 
0.930
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
 
 0.908
RC1_3033
Sensor protein torS, putative.
  
 
 0.908
rpFG
Response regulator R PFG; Contains PF01966 identified by match to protein family HMM PF04329 match to protein family HMM PF04330 match to protein family HMM PF04331.
 
 0.904
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
 
 
 0.899
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.