Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RC1_3532enoyl-CoA hydratase; Identified by match to protein family HMM PF03776 match to protein family HMM TIGR01215. (285 aa)    
Predicted Functional Partners:
RC1_0377
[synonyms] Hydroxymethylglutaryl-CoA lyase HMG-CoA lyase identified by match to protein family HMM PF00231.
 
 
 0.993
RC1_3533
acetyl-CoA carboxylase carboxyltransferase; Identified by match to protein family HMM PF01656 match to protein family HMM TIGR01968.
 
 
 0.986
RC1_3531
GB PF02785: Biotin carboxylase C-terminal domain; PF00289: Carbamoyl-phosphate synt Hase L chain, N-terminal; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02548 match to protein family HMM TIGR00222.
  
 0.983
RC1_3534
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF03775 match to protein family HMM PF05209 match to protein family HMM TIGR01222.
 
 0.917
RC1_3530
[synonyms] Peroxisomal 2,4-dienoyl CoA reductase identified by match to protein family HMM PF00702.
   
  0.813
RC1_0397
acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00487; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.742
fadA
3-ketoacyl-CoA thiolase; [synonym] (Fatty oxidation complex beta subunit); Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.742
fadA-2
3-ketoacyl-CoA thiolase; [synonyms] (Fatty oxidation complex beta subunit); Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.742
RC1_3948
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.742
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
   
 0.723
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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