STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katACatalase; Gene symbol synonym catA; identified by match to protein family HMM PF00430. (487 aa)    
Predicted Functional Partners:
glcE
Glycolate oxidase, subunit glcE; Identified by match to protein family HMM PF01584.
   
 0.919
glcD
Glycolate oxidase, subunit GlcD; Identified by match to protein family HMM PF00072.
   
 0.919
kat
Catalase; Identified by match to protein family HMM PF00444 match to protein family HMM TIGR01022.
  
  
 
0.909
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
   
 
  0.902
glcF
Glycolate oxidase, iron-sulfur subunit; Identified by match to protein family HMM PF01584.
     
  0.900
ahpC
Alkyl hydroperoxide reductase C; Identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681.
  
 
 0.876
fbaB
Fructose-bisphosphate aldolase, class I; Identified by match to protein family HMM PF00004 match to protein family HMM PF05491 match to protein family HMM PF05496 match to protein family HMM PF07728 match to protein family HMM TIGR00635.
   
    0.820
hfq
Protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.771
nfrA
Host factor protein; Gene name synonym hfq.Also called nif regulatory factor.
    
 
 0.771
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.745
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.