Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_3563Conserved hypothetical protein; Identified by match to protein family HMM PF05853. (118 aa)    
Predicted Functional Partners:
dnaJ-3
Chaperone protein DnaJ, putative; PF01556 Has uncharacterized homologs of the same identity; In a close position to other chaperonin genes in the same cluster; identified by match to protein family HMM PF00106.
 
   0.917
trxC
Thioredoxin 2; [synonyms] Protein-disulfide reductase identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786.
     
 0.664
RC1_4112
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.664
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.597
RC1_0582
DnaJ family, molecular chaperone, putative; PF01556 PF00226: DnaJ domain; Has many homologs from the same family; identified by match to protein family HMM PF00929.
 
   0.594
rpoC
DNA-directed RNA polymerase, beta' subunit, putative; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.493
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.488
rpoZ
DNA-directed RNA polymerase, omega subunit, putative; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.488
RC1_0501
Sensor histidine kinase, putative; Identified by match to protein family HMM PF01609.
  
 
   0.475
dnaJ-2
Chaperone protein DnaJ, putative; PF00226 Has uncharacterized homologs of the same identity; In a close position to other chaperonin genes in the same cluster.
 
   0.473
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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