Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_3571Conserved hypothetical protein; Identified by match to protein family HMM PF00009 match to protein family HMM PF00679 match to protein family HMM PF03144 match to protein family HMM PF03764 match to protein family HMM TIGR00231 match to protein family HMM TIGR00484. (204 aa)    
Predicted Functional Partners:
RC1_3570
Also called methyl-accepting chemotaxis receptor.
 
     0.567
aapM
General L-amino acid transport system permease protein AapM.
  
 
 0.449
aapP
General L-amino acid transport ATP-binding protein AapP; Identified by match to protein family HMM PF05690.
  
 
 0.412
gltB
Glutamate synthase, large subunit.
     
 0.406
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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