Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gnlPutative gluconolactonase. (311 aa)    
Predicted Functional Partners:
gcd
[synonyms] Glucose dehydrogenase (pyrroloquinoline-quinone) identified by match to protein family HMM PF03595.
  
  
 0.938
pgi
Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00391 match to protein family HMM PF01326 match to protein family HMM PF02896 match to protein family HMM TIGR01418; Belongs to the GPI family.
     
 0.612
RC1_4047
Conserved hypothetical protein; Identified by match to protein family HMM PF00535.
  
     0.529
RC1_2897
MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) family.
  
     0.474
RC1_0258
Thioesterase family protein.
  
     0.473
rplY
Ribosomal 5S rRNA E-loop binding protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
  
 0.449
pncA
Pyrazinamidase; [synonyms] Nicotine deamidase identified by match to protein family HMM PF01571.
  
    0.446
RC1_3596
General stress protein, putative; Also called pyridoxamine 5'-phosphate oxidase.
   
    0.412
RC1_2522
feruloyl-CoA synthetase; Identified by match to protein family HMM PF02190.
  
 
   0.403
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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