STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3709Hydantoinase. (523 aa)    
Predicted Functional Partners:
RC1_3710
Conserved hypothetical protein; Identified by match to protein family HMM PF00501.
    0.994
huyB
N-methylhydantoinase B (HuyB-1).
 
 0.983
RC1_0628
5-oxoprolinase; Identified by match to protein family HMM PF01795 match to protein family HMM TIGR00006.
 
 
0.867
RC1_3711
TonB-dependent receptor, putative; Identified by match to protein family HMM PF01609.
 
     0.730
hyuA
Hydantoin utilization protein A.
 
    
0.627
RC1_0659
Hydrolase, carbon-nitrogen family; D-N-alpha-carbamilase identified by match to protein family HMM PF04952.
    
  0.506
RC1_3715
FAD dependent oxidoreductase, putative; Identified by match to protein family HMM PF03270.
  
    0.492
RC1_3714
Conserved domain protein; Identified by match to protein family HMM PF05082.
       0.488
RC1_3716
Renal dipeptidase superfamily, putative; PF01244 Has many uncharacterized homologs With this identity; identified by match to protein family HMM PF02579 match to protein family HMM TIGR02663.
       0.473
RC1_3708
Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00313 match to protein family HMM PF08206.
       0.465
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.