STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
repAReplication protein A, putative; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715. (412 aa)    
Predicted Functional Partners:
RC1_3743
Conserved hypothetical protein; Identified by match to protein family HMM PF01968 match to protein family HMM PF05378; Belongs to the ParB family.
 
 
 0.956
parB
Also called ParB family protein; identified by match to protein family HMM PF01381 match to protein family HMM TIGR02607; Belongs to the ParB family.
 
 
 0.916
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
      
 0.696
hupB
DNA-binding protein HupB; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
      
 0.694
holA
DNA polymerase III, delta subunit, putative; Identified by match to protein family HMM PF00535.
     
 0.692
RC1_0787
Probable DNA polymerase III; Identified by match to protein family HMM PF00291.
      
 0.691
RC1_0060
DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.673
RC1_0061
DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.673
RC1_1297
Hypothetical protein; Identified by Glimmer2 putative.
  
 
 0.585
RC1_0168
Cobyrinic acid a,c-diamide synthase, putative.
  
     0.496
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.