STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3766Conserved hypothetical protein; Identified by match to protein family HMM PF01547. (680 aa)    
Predicted Functional Partners:
neuA
Acylneuraminate cytidylyltransferase, putative; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715.
 
    0.758
RC1_0530
Conserved hypothetical protein; Identified by match to protein family HMM PF01053 match to protein family HMM PF01212.
  
  
 0.718
RC1_0531
Conserved hypothetical protein; Identified by match to protein family HMM PF06299.
  
  
 0.718
RC1_0532
Conserved hypothetical protein; Identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR02318.
  
  
 0.718
RC1_0770
Conserved hypothetical protein; Identified by match to protein family HMM PF01262 match to protein family HMM PF05222 match to protein family HMM TIGR00518.
  
  
 0.718
RC1_4022
Hypothetical protein; Identified by Glimmer2 putative.
  
  
 0.718
RC1_4023
Conserved hypothetical protein; Identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321.
  
  
 0.718
nans
N-acetylneuraminic acid synthase; [Synonyms] Sialic acid synt Hase identified by match to protein family HMM PF01497.
 
  
 0.703
RC1_0517
Identified by match to protein family HMM PF00092 match to protein family HMM PF06707.
  
  
 0.531
RC1_3767
Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.
       0.503
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.