STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3839TonB dependent receptor, putative; Identified by match to protein family HMM PF03061. (912 aa)    
Predicted Functional Partners:
tonB-2
Protein TonB; Links inner and outer membranes; identified by match to protein family HMM PF01706 match to protein family HMM TIGR00207.
  
 
 0.736
RC1_0806
TonB dependent receptor, putative.
  
   
 0.683
RC1_3836
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02317.
 
    0.664
RC1_3837
Conserved hypothetical protein; Identified by match to protein family HMM PF00285 match to protein family HMM TIGR01800.
 
    0.631
exbD1
Biopolymer transport exbD1 protein, putative; Identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730.
  
  
 0.613
tonB-6
TonB-dependent siderophore receptor, putative; Identified by match to protein family HMM PF02562.
  
  
 0.613
exbD
Biopolymer transport ExbD protein; Identified by match to protein family HMM PF00873.
  
  
 0.611
exbD-2
Biopolymer transport ExbD protein; Identified by match to protein family HMM PF00015.
  
  
 0.611
exbD-3
Biopolymer transport ExbD protein; Identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993.
  
  
 0.611
tonB-7
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.606
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.