STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3854C4-dicarboxylate transporter; Identified by match to protein family HMM PF02012 match to protein family HMM PF05345 match to protein family HMM TIGR01965. (334 aa)    
Predicted Functional Partners:
bchE
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; Identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730.
  
   
 0.747
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF03180; Belongs to the phosphoglycerate kinase family.
     
 0.716
crtJ
Transcriptional regulator CrtJ (homologous to ppsR); Identified by match to protein family HMM PF00556.
      
 0.696
yfiA
Ribosomal subunit interface protein, putative; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
      
 0.696
crtB
Phytoene synthase.
      
 0.695
crtI
[synonyms] Phytoene desaturase identified by match to protein family HMM PF01323.
      
 0.692
regB
Sensor histidine kinase RegB; Member of the two-component regulatory system regB.
      
 0.691
regA
Photosynthetic apparatus regulatory protein RegA; Contains PF00072.
      
 0.691
bchC
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase, putative.
      
 0.690
RC1_0332
Conserved hypothetical protein.
   
    0.665
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.