STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3894PepSY-associated TM helix, putative; Identified by match to protein family HMM PF00005. (486 aa)    
Predicted Functional Partners:
fcuA
Ferrichrome receptor FcuA; Identified by match to protein family HMM PF01497.
 
  
 0.889
RC1_3893
Hypothetical protein; Identified by Glimmer2 putative.
       0.694
RC1_4041
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00534.
 
     0.652
RC1_0291
TonB dependent receptor, putative.
 
  
 0.642
tonB-6
TonB-dependent siderophore receptor, putative; Identified by match to protein family HMM PF02562.
 
  
 0.627
RC1_3810
TonB dependent receptor, putative.
 
     0.603
RC1_3938
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00028 match to protein family HMM PF00353.
 
    0.588
RC1_2392
TonB-dependent receptor, putative; Identified by match to protein family HMM PF02277.
 
  
 0.577
RC1_3844
Sigma factor regulatory protein, FecR; Identified by match to protein family HMM PF00196 match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937.
 
     0.548
RC1_3711
TonB-dependent receptor, putative; Identified by match to protein family HMM PF01609.
 
     0.532
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.