STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3923Diguanylate cyclase, putative; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM TIGR00229. (594 aa)    
Predicted Functional Partners:
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
  
 
 0.996
barA
Signal transduction histidine-protein kinase BarA; Identified by match to protein family HMM PF01887.
 
 0.996
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
 
 0.991
RC1_3033
Sensor protein torS, putative.
  
 
 0.991
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
 
 
 0.990
RC1_1779
Response regulator receiver domain protein; Identified by match to protein family HMM PF04055 match to protein family HMM PF06463 match to protein family HMM TIGR02666.
 
 
 0.990
RC1_3342
Complexhybrid Signal Transduction Protein.
 
 
 0.990
hdpA
Hybrid phosphotransfer protein, HdpA; [contains] response regulator receiver domain; PAS domain S-box; identified by match to protein family HMM PF00072 match to protein family HMM PF01339.
  
 
 0.988
RC1_0633
Sensor histidine kinase; Contains PF02518, PF00072, and TIGR00229; identified by match to protein family HMM PF00226.
 
 0.988
RC1_1464
Sensor histidine kinase; Contains PF02518.
 
 0.988
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.