STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citE[Synonyms] Citrase beta chain Citrate (pro-3S)-lyase beta chain Citryl-CoA lyase subunit; Belongs to the HpcH/HpaI aldolase family. (288 aa)    
Predicted Functional Partners:
RC1_0227
Class II aldolase, putative; Identified by match to protein family HMM PF02120.
   
    0.820
fucA
L-fuculose phosphate aldolase.
   
    0.820
pdxY
Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
       0.628
tme
NADP-dependent malic enzyme; Synonym gene name 'maeB' from E.coli identified by match to protein family HMM PF00392 match to protein family HMM PF07702 match to protein family HMM TIGR02018.
 
  
 0.595
bhbA
methylmalonyl-CoA mutase.
  
  
 0.593
dme
NAD-dependent malic enzyme; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028.
  
  
 0.539
sdhA
Succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
  
 0.511
gyaR
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
   
 0.483
RC1_1521
CaiB; Identified by match to protein family HMM PF06282; Belongs to the CoA-transferase III family.
 
  
 0.473
RC1_3257
[synonyms] 2-methylacyl-CoA racemase [similarity] Belongs to the caiB.
 
  
 0.463
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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